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About me
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Members of the Wild Microbiomes group traveled to Lausanne, Switzerland to present posters at the International Symposium on Microbial Ecology.
Link to paper here
Recommended citation: Williams CL, Willard S, Kouba A, Sparks D, Holmes W, Falcone J, Williams CH, Brown A (2012). Dietary shifts affect the gastrointestinal microflora of the giant panda (Ailuropoda melanoleuca). Journal of Animal Physiology and Animal Nutrition, 97: 577-585.
Link to paper here
Recommended citation: Calatayud NE, Langhorne CJ, Mullen AC, Williams CL, Bullock L, Smith T, Davinroy E, Vance CK, Kouba AJ, Willard ST (2015). The effects of hormone priming regimen on spontaneous oviposition with and without hibernation in the boreal toad (Anaxyrus boreas boreas). Theriogenology, 84(4): 600-7.
Link to paper here
Recommended citation: Williams CL, Dill-McFarland KA, Vandewege M, Sparks DL, Kouba AJ, Willard ST, Suen G, Brown AE. (2016). Dietary shifts may trigger dysbiosis and mucous stools in giant pandas (Ailuropoda melanoleuca). Frontiers in Microbiology, 7:661.
Link to paper here
Recommended citation: Williams CL, Dill-McFarland KA, Sparks DL, Kouba AJ, Willard ST, Suen G, Brown AE. (2018). Dietary changes during weaning shape the gut microbiota of red pandas (Ailurus fulgens). Conservation Physiology, 6(1) cox075.
Link to paper here
Recommended citation: Williams CL, Caraballo-Rodríguez AM, Allaband C, Zarrinpar A, Knight R, Gauglitz JM (2019). Wildlife-microbiome interactions and disease: exploring opportunities for disease mitigation across ecological scales, Drug Discovery Today: Disease Models, 28: 105-115.
Link to paper here
Recommended citation: Williams CL, Ybarra AR, Meredith AN, Durrant BS, Tubbs CW. (2019) Gut microbiota and phytoestrogen-associated infertility in southern white rhinoceros, mBio 10(2) e00311-19.
Link to paper here
Recommended citation: Williams CL, Reyero N, Tubbs CW, Martyniuk C, Bisesi JH (2020). Microbiome-endocrine regulation: Perspectives from comparative animal models. General and Comparative Endocrinology, 292: 113437.
Link to paper here
Recommended citation: Jacobs LE, Hammond TT, Gaffney PM, Curtis MJ, Shier DM, Durrant BS, Williams CL*, Calatayud NE* (2021). Using assisted reproductive technologies to assess the development of secondary sexual characteristics, ovarian senescence, and pseudohermaphroditism in an endangered frog, Rana muscosa, Reproduction, Fertility and Development 33(9) 610-614. *contributed equally
Link to paper here
Recommended citation: Gauglitz, JM, West, KA, Bittremieux, W, Williams, CL, Weldon KC, Panitchpakdi M, Di Ottavio F, Aceves CM, Brown E, Sikora NC, Jarmusch AK, Martino C, Tripathi A, Sayyari E, Shaffer JP, Coras R, Vargas F, Goldasich LD, Schwartz T, Bryant M, Humphrey G, Johnson AJ, Spengler K, Belda-Ferre P, Diaz E, McDonald D, Zhu Q, Nguyen DS, Elijah EO, Wang M, Marotz C, Sprecher KE, Robles DV, Withrow D, Ackermann G, Herrera L, Bradford BJ, Marques LMM, Amaral JG, Silva RM, Veras FP, Cunha TM, Oliveira RDR, Louzada-Junior P, Mills RH, Galasko D, Dulai PS, Kalashnikova TI, Wittenberg C, Gonzalez DJ, Terkeltaub R, Doty MM, Kim JH, Rhee KE, Beauchamp-Walters J, Wright KP, Dominguez-Bello MG, Manary M, Oliveira MF, Boland BS, Lopes NP, Guma M, Swafford AD, Dutton RJ, Knight R, Dorrestein PC (2022). Enhancing untargeted metabolomics using metadata-based source annotation. Nature Biotechnology DOI:10.1038/s41587-022-01368-1.
Link to paper here
Recommended citation: Calatayud NE, Jacobs LE, Williams CL, Steiner C, Shier D (2022). Recovering an endangered frog species using integrative reproductive technologies, Theriogenology 191: 141-152.
Link to paper here
Recommended citation: Clapham M, Wilson AE, Williams CL, Sergiel A (2023). Brown bear skin-borne secretions display evidence of individuality and age-sex variation, Scientific Reports, 13, Article number: 3163.
Link to paper here
Recommended citation: Williams CE, Williams CL, Logan ML (2023). Climate change is not just global warming: Multidimensional impacts on animal gut microbiota. Microbial Biotechnology, 2023;00:1–9.
Link to pre-print here
Recommended citation: Williams CL, Williams CE, King SND, Shier DM (2023) Environmental change drives multi-generational shifts in the gut microbiome that mirror changing animal fitness. bioRxiv 2023.10.24.563854; doi: https://doi.org/10.1101/2023.10.24.563854.
Link to paper here.
Recommended citation: Williams CE, Brown AE, Williams CL (2023) The role of diet and host species in shaping the seasonal dynamics of the gut microbiome. FEMS Microbiology Ecology, fiad156, https://doi.org/10.1093/femsec/fiad156.
Link to paper here.
Recommended citation: Williams CE, Hammer TJ, Williams CL (2024) Diversity alone does not reliably indicate the healthiness of an animal microbiome. The ISME Journal, wrae133, https://doi.org/10.1093/ismejo/wrae133.
Link to action plan here
Recommended citation: Calatayud, NE, Howell L, Upton R, Tapley B, Johnson K, Browne R, Marcec R, Williams CL, O’Brien D, Hobbs R, Trudeau VT, Bower D, Clulow S, Clulow J, Della Tonga G. (2024) Amphibian Assisted Reproduction and Biobanking in Amphibian conservation action plan: A status review and roadmap for global amphibian conservation. Wren, S., Borzée. A., Marcec-Greaves, R. & Angulo, A. (Eds.). IUCN SSC Occasional Paper, No 57. Gland, Switzerland: IUCN (pp. 285-308).
Recommended citation: Parker JM, Williams CL, Deel HL, David L, Goldenberg SZ, Sukuma DA, D’Ammando G, Daballen D, Owen MA, Tubbs CW, Mulindi SR, Wittemeyer G (2024) Livestock exposure, seasonal diet shifts, and age influence wild African savanna elephant gut microbiomes, in review at Proceedings of the Royal Society B.
The gut microbiome can be shaped by both environmental factors as well as its host’s evolutionary history. Factors such as changing diets and/or environments can alter microbiota, sometimes leading to negative outcomes. However, we lack a fundamental understanding of how microbes and their functions change over time and between generations and how these changes affects hosts. Exploring symbiotic relationships like these is critical to elucidate mechanisms of adaptation surrounding host-symbiont homeostasis.
Since environmental chemicals interface with microbiota within the gut, they can directly target microbiota leading to systemic effects, but microbiota can also influence environmental chemical severity through chemical transformations. One gap in our knowledge is whether microbiota may mitigate the effects of environmental chemical exposure. To better understand the role gut microbiota play in regulating the endocrine system, I integrate multiple disciplines to examine interactions between microbiota and environmental chemicals and their potential to affect endocrine function, a critical step in determining which microbiota are targeted and/or which ones may offer mitigation potential.
Microbial biotherapeutics are revolutionizing medicine, and their use is expanding. Microbes have been linked to multiple disease states and have also been used as treatment in humans and other animals, such as whole microbiome transfaunation or fecal microbiota transplantation (FMT), to individual microbiota, like probiotics, or microbially-derived molecules. Despite their success in improving health outcomes in some cases, the mechanisms that modulate the efficacy of such treatments remain poorly understood. My work aims to develop microbially-derived therapies while conserving diversity across multiple ecological scales, as macro-organisms will benefit from the conservation of the diverse microorganisms and metabolites that coexist with them.
Mass spectrometry is a powerful tool. Chemical profiling of different biospecimens gives insight into animals at the individual and population level. Our work using both targeted and untargeted mass spectrometry provides dietary readouts, connects host phenotypes to microbial metabolism, as well as identifies individuals and their reproductive state using chemical profiling.
See the joint San Diego Zoo and Smithsonian Conservation Biology Institute symposium recordings for day 1 and day 2.
See our poster at ISME18 here.
Graduate student, Long Island University, 2020
Graduate student, University of California, Irvine, 2020
Graduate student, University of Nevada-Reno, 2021